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Top 8 Considerations for Choosing a PDX Model

01 Jul 2025

Patient-Derived Xenograft (PDX) models have become invaluable tools in cancer research and drug development, offering a more accurate representation of human tumors compared to traditional cell lines. By implanting patient-derived tumor tissues into immunocompromised mice, researchers can study tumor behavior, test therapies and understand drug resistance in a way that mirrors the complexities of human cancer.

 
Choosing the right PDX model is crucial for generating relevant and reproducible results. Consider these top 10 criteria when evaluating PDX for your next program.


1. Tumor type


Different types of cancer exhibit distinct biological behaviors and treatment responses. It’s essential to select a PDX model that mirrors the specific tumor type you are investigating. Consideration of subtype within the tumor (e.g., triple-negative vs. hormone receptor-positive in breast cancer) can also impact findings.


2. Patient characteristics


The demographic profile of the patient from whom the tumor was derived can influence the model's relevance. Factors such as age, ethnicity, gender and prior treatment history may affect tumor biology and response. For instance, tumors from younger patients may have different genetic mutations compared to those from older individuals. Selecting a model that reflects the target population for your research enhances the translatability of your findings.


3. Engraftment efficiency


Engraftment efficiency refers to the success rate of tumor tissues growing in the host mice. Some tumors may engraft well while others may fail to grow or only exhibit limited growth. Models with high engraftment rates are preferred, as they ensure that researchers can conduct reliable experiments. 


4. Model stability


Stability of the PDX model across passages is crucial for maintaining experimental consistency. As tumors are passaged in mice, they can undergo genetic and phenotypic changes. A stable model will retain key characteristics of the original tumor for multiple generations, allowing for reliable longitudinal studies. Researchers should assess the stability of the model by monitoring growth patterns, histological features, genetic drift and response to therapies over time.


5. Histological characteristics


The histological features of the PDX model should closely resemble those of the original tumor. This includes aspects like cellular architecture, differentiation status and presence of stroma. Maintaining these characteristics can help in understanding tumor behavior and therapeutic response, as well as in validating findings against the clinical context.


6. Genetic and molecular profiling


A thorough understanding of the genetic and molecular profile of the tumor is essential. Many PDX models undergo genomic sequencing to identify key mutations, copy number variations and gene expression patterns. Choosing a model based on these molecular characteristics allows researchers to investigate targeted therapies and elucidate mechanisms of resistance, leading to more effective treatment strategies.


7. Availability and cost


Practical considerations, such as the availability of specific PDX models and associated costs, can influence the choice of model. Some models may be commercially available or accessible through collaborations, while others might require custom development, often a time-intensive and costly process. Researchers should assess their budget and timeline to enable selection of a model that aligns with their resources.


8. Ethical considerations


Using PDX models raises ethical considerations, particularly regarding patient consent and the use of human tissues. Researchers should adhere to ethical guidelines and obtain appropriate consent from patients. Additionally, animal welfare is a critical consideration in PDX studies, requiring compliance with institutional and regulatory standards for animal research.


Choosing the right PDX model is a multifaceted process that requires careful consideration of various factors, from tumor characteristics to ethical implications. By understanding these key considerations, researchers can select models that not only enhance the validity of their findings but also contribute to the advancement of cancer research and therapy development.



 

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